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  | ReadArtificialSAMfile(art,
        compareList,
        RefArray,
        readdic)
   | source code |  Function for reading a complete ReferenceFile into Memory. 
    Parameters:
        art(string) - artificial file.RefArray(array) - Results from reading the reference SAM file.compareList(list) - list containt 1s, where there is a difference in the genomes and 
          0s where the nucleotides are equal.readdic(dictionary) - dictionary containing read ids and read qualities.Returns: dictionaryaligned read objects from the artificial reference, which where 
          uniquely aligned. |