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Created 2012
Script which contains the functionality to find start and stop codons in all ORFs in the genome. It is very basic and does not consider intro-exon structure. It is possible to generate the start / stop list extern and give it as input to the main program.
This script is a python port from a java implementation by Franziska Zickmann.
Author: Sven Giese
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 Get orf positions (forward/backward) and return them in a dictionary 
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 function to identify open reading frames in a dna sequence, careful: intron exon structures are not respected! 
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 return the index of the first position of codon in the dna sequence 
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