NAME
gt-convertseq - Parse and convert sequence file formats (FASTA/FASTQ, GenBank, EMBL).
SYNOPSIS
gt convertseq [options] file […]
DESCRIPTION
- -v [yes|no]
- 
be verbose (default: no) 
- -r [yes|no]
- 
reverse complement sequences (default: no) 
- -showfilelengthvalues [yes|no]
- 
show filelengths (default: no) 
- -noseq [yes|no]
- 
do not show sequences (default: no) 
- -fastawidth [value]
- 
FASTA output line width, 0 for unlimited (default: 60) 
- -contractdnawc [yes|no]
- 
replace stretches of DNA wildcards with a single N (default: no) 
- -contractproteinwc [yes|no]
- 
replace stretches of protein wildcards with a single X (default: no) 
- -o [filename]
- 
redirect output to specified file (default: undefined) 
- -gzip [yes|no]
- 
write gzip compressed output file (default: no) 
- -bzip2 [yes|no]
- 
write bzip2 compressed output file (default: no) 
- -force [yes|no]
- 
force writing to output file (default: no) 
- -help
- 
display help and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.