NAME
gt-inlineseq_add - Adds inline sequences from external source to GFF3 input.
SYNOPSIS
gt inlineseq_add [options] [GFF3_file …]
DESCRIPTION
- -seqfile [filename]
- 
set the sequence file from which to take the sequences (default: undefined) 
- -encseq [filename]
- 
set the encoded sequence indexname from which to take the sequences (default: undefined) 
- -seqfiles
- 
set the sequence files from which to extract the features use -- to terminate the list of sequence files 
- -matchdesc [yes|no]
- 
search the sequence descriptions from the input files for the desired sequence IDs (in GFF3), reporting the first match (default: no) 
- -matchdescstart [yes|no]
- 
exactly match the sequence descriptions from the input files for the desired sequence IDs (in GFF3) from the beginning to the first whitespace (default: no) 
- -usedesc [yes|no]
- 
use sequence descriptions to map the sequence IDs (in GFF3) to actual sequence entries. If a description contains a sequence range (e.g., III:1000001..2000000), the first part is used as sequence ID (III) and the first range position as offset (1000001) (default: no) 
- -regionmapping [string]
- 
set file containing sequence-region to sequence file mapping (default: undefined) 
- -o [filename]
- 
redirect output to specified file (default: undefined) 
- -gzip [yes|no]
- 
write gzip compressed output file (default: no) 
- -bzip2 [yes|no]
- 
write bzip2 compressed output file (default: no) 
- -force [yes|no]
- 
force writing to output file (default: no) 
- -help
- 
display help and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.