NAME
gt-tallymer-occratio - Compute occurrence ratio for a set of sequences represented by an enhanced suffix array.
SYNOPSIS
gt tallymer occratio [options] -esa suffixerator-index [options]
DESCRIPTION
- -esa [string]
- 
specify suffixerator-index (mandatory option) (default: undefined) 
- -minmersize [value]
- 
specify minimum mer size for which to compute the occurrence distribution (default: 0) 
- -maxmersize [value]
- 
specify maximum mer size for which to compute the occurrence distribution (default: 0) 
- -step [value]
- 
specify step size when specifying mer sizes (default: 1) 
- -mersizes
- 
specify mer sizes as non-empty sequence of non decreasing positive integers 
- -output
- 
use combination of the following keywords: unique nonunique nonuniquemulti relative total to specify kind of output 
- -scan [yes|no]
- 
read suffixerator-index sequentially instead of mapping it to memory (default: no) 
- -v [yes|no]
- 
be verbose (default: no) 
- -help
- 
display help and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to <kurtz@zbh.uni-hamburg.de>.