NAME
gt-simreads - Simulate sequencing reads from random positions in the input sequence(s).
SYNOPSIS
gt simreads [option …] <encseq>
DESCRIPTION
- -num [value]
- 
desired number of reads (default: undefined) 
- -coverage [value]
- 
desired coverage of the reads (default: undefined) 
- -len [value]
- 
fixed read length (default: undefined) 
- -minlen [value]
- 
minimal read length (default: undefined) 
- -maxlen [value]
- 
maximal read length (default: undefined) 
- -distlen [string]
- 
use read length distribution file (in the output format of the seqstat tool) (default: undefined) 
- -o [filename]
- 
redirect output to specified file (default: undefined) 
- -gzip [yes|no]
- 
write gzip compressed output file (default: no) 
- -bzip2 [yes|no]
- 
write bzip2 compressed output file (default: no) 
- -force [yes|no]
- 
force writing to output file (default: no) 
- -p [yes|no]
- 
show a progress bar (default: no) 
- -v [yes|no]
- 
be verbose (default: no) 
- -ds [string]
- 
output distribution of starting positions to specified file (default: undefined) 
- -dl [string]
- 
output distribution of read lengths to specified file (default: undefined) 
- -ss [yes|no]
- 
simulate reads in forward direction only (default: no) 
- -help
- 
display help for basic options and exit 
- -help+
- 
display help for all options and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to <gonnella@zbh.uni-hamburg.de>.