NAME
gt-ltrclustering - Cluster features of LTRs.
SYNOPSIS
gt ltrclustering [option …] indexname [GFF3_file …]
DESCRIPTION
- -psmall [value]
- 
specify how many percent of the smaller sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0) 
- -plarge [value]
- 
specify how many percent of the larger sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0) 
- -o [filename]
- 
redirect output to specified file (default: undefined) 
- -gzip [yes|no]
- 
write gzip compressed output file (default: no) 
- -bzip2 [yes|no]
- 
write bzip2 compressed output file (default: no) 
- -force [yes|no]
- 
force writing to output file (default: no) 
- -help
- 
display help and exit 
- -version
- 
display version information and exit 
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.